PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019905-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 688aa    MW: 75497.8 Da    PI: 5.3371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019905-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12505550454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  WALNUT_00019905-RA 505 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAIMYINEL 550
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5583264IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.933501550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-14504555No hitNo description
SuperFamilySSF474592.75E-17504572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9505550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18505571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-15507556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MHGMTDYRIT PSMNLWAPDD NPSVIESFIS SDLSFWATPP PPAQGQAQHQ QLQPQSSASN  60
TDDPSKAIAQ SLPSVAPFNQ ETLQQRLLAL IEGAHESWTY AIFWQSSYDY SGASLLGWGD  120
GYYKGDDDKS KGKAKSTSSV ADQEHRKKVL RELNSLISGS AVSSADDTID EEVTDTEWFF  180
LVSMTQSFVN GSGLAGQAFF NSSPVWVSGA DRLSAWPCER TRQGQVFGLQ TMVCIPSANG  240
VVELGSTALI FQSSDLMNKV RVLFNFESLE MGGSWPITDQ GENDPSSLWI SDPTQAALTE  300
IKDSLDNSTV PSVPATTNGG LQISKAIQFE NPSSSSLTEN ASAIHMQNTH QGHQQRQQSQ  360
TQSFLTRELN FSEYGYDGSS VAKNGNSNSF KPESGEILNF EESKRSSYVS SHPQFAAAAV  420
EENNKKKRSP TSRGSNEEGM LSFTSGVILS NTCMVKSSGG GGDSDHSDLE ASVAKEADSS  480
RVVEPEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQK FYALRAVVPN VSKMDKASLL  540
GDAIMYINEL KAKLQSADSD KDDLQKQLEA LKKDLTSKEQ RHSGSEQPPP PPPSQSDQDS  600
KTSRLIDLDI DVRIIGWDAM IRIQCNKKNH PAARLMAALK EMDLDVHHAS VSVVNDLMIQ  660
QATVKMGSRF YTQEQLRLAL SAKVGDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-72782664194Transcription factor MYC3
4rqw_B1e-72782664194Transcription factor MYC3
4rs9_A1e-72782664194Transcription factor MYC3
4yz6_A1e-72782664194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1486494KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280253.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLF6HT900.0F6HT90_VITVI; Putative uncharacterized protein
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-177bHLH family protein